http://wiki.metabolomicssociety.org/api.php?action=feedcontributions&user=Isabel&feedformat=atomMetabolomics Society Wiki - User contributions [en]2024-03-29T01:29:17ZUser contributionsMediaWiki 1.28.0http://wiki.metabolomicssociety.org/index.php?title=NIST_Standard_Reference_Database&diff=797NIST Standard Reference Database2018-04-23T10:37:54Z<p>Isabel: Created page with "Extensive collection of data sets (EI MS, MS/MS, Replicate spectra, Retention index). [https://www.nist.gov/srd/nist-standard-reference-database-1a-v17 Link] Category:Data..."</p>
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<div>Extensive collection of data sets (EI MS, MS/MS, Replicate spectra, Retention index).<br />
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[https://www.nist.gov/srd/nist-standard-reference-database-1a-v17 Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Lipidmaps&diff=793Lipidmaps2018-04-22T17:40:45Z<p>Isabel: </p>
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<div>==Introduction==<br />
Lipidmaps hosts a database of lipid structures classified with a systematic nomenclature. Structures are cross-referenced to other databases.<br />
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== Internal links ==<br />
* [[LIPID MAPS Structure Database]]<br />
* [[LIPID MAPS Proteome Database]]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=MassBank&diff=792MassBank2018-04-22T17:38:26Z<p>Isabel: </p>
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<div>==Introduction==<br />
MassBank is one of the largest open databases of mass spectral data and covers numerous different instrument types. MassBank was initiated by the Institute for Advanced Biosciences, in Keio University, Tsuruoka City, Yamagata, Japan.<br />
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== Internal links ==<br />
* [[MassBank of North America]]<br />
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== External links ==<br />
* [http://www.massbank.jp Official website]<br />
* [http://massbank.eu/MassBank/ European mirror]<br />
* [https://github.com/MassBank Github page with tools to interact with the database]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Spectral_Database_for_Organic_Compounds&diff=791Spectral Database for Organic Compounds2018-04-22T17:31:13Z<p>Isabel: Created page with "Repository of spectral database of organic compound; Variety of data sets (MS, NMR, IR, Raman, ESR). [https://www.library.ucsb.edu/node/6522 Link] Category:Databases"</p>
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<div>Repository of spectral database of organic compound; Variety of data sets (MS, NMR, IR, Raman, ESR).<br />
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[https://www.library.ucsb.edu/node/6522 Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=MetabolomeExpress&diff=790MetabolomeExpress2018-04-22T17:29:01Z<p>Isabel: Created page with "Private and public repository of un-curated/curated metabolomics data; Interactive tools for data visualization, processing and statistical analysis. [https://www.metabolome-..."</p>
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<div>Private and public repository of un-curated/curated metabolomics data; Interactive tools for data visualization, processing and statistical analysis.<br />
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[https://www.metabolome-express.org Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=MassBank_of_North_America&diff=789MassBank of North America2018-04-22T17:27:28Z<p>Isabel: Created page with "MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records [http://mona.fiehnlab.uc..."</p>
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<div>MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records<br />
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[http://mona.fiehnlab.ucdavis.edu Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Madison_Metabolomics_Consortium_Database&diff=788Madison Metabolomics Consortium Database2018-04-22T17:23:15Z<p>Isabel: Created page with "MS and NMR data sets [http://mmcd.nmrfam.wisc.edu Link] Category:Databases"</p>
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<div>MS and NMR data sets<br />
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[http://mmcd.nmrfam.wisc.edu Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=LIPID_MAPS_Proteome_Database&diff=787LIPID MAPS Proteome Database2018-04-22T17:21:23Z<p>Isabel: Created page with "Lipid-associated protein sequences with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. Browse or search by species, lipid class association..."</p>
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<div>Lipid-associated protein sequences with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. Browse or search by species, lipid class association, and/or keywords.<br />
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[http://www.lipidmaps.org/data/proteome/LMPD.php Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=LIPID_MAPS_Structure_Database&diff=786LIPID MAPS Structure Database2018-04-22T17:19:38Z<p>Isabel: Created page with "The LIPID MAPS Structure Database (LMSD) is comprised of structures and annotations of biologically relevant lipids, and includes representative examples from each category of..."</p>
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<div>The LIPID MAPS Structure Database (LMSD) is comprised of structures and annotations of biologically relevant lipids, and includes representative examples from each category of the LIPID MAPS Lipid Classification System.<br />
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[http://www.lipidmaps.org/data/structure/index.php Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Category:Databases&diff=785Category:Databases2018-04-22T17:17:30Z<p>Isabel: Replaced content with "This page lists open-access metabolomics-related databases."</p>
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<div>This page lists open-access metabolomics-related databases.</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Glycan_Mass_Spectral_Database&diff=784Glycan Mass Spectral Database2018-04-22T17:15:47Z<p>Isabel: Created page with "Glycan Mass Spectral Database (GMDB) Database of MS spectra data for N- and O-linked glycans and glycolipids glycans along with their partial chemical structures. [http://jc..."</p>
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<div>Glycan Mass Spectral Database (GMDB) Database of MS spectra data for N- and O-linked glycans and glycolipids glycans along with their partial chemical structures. <br />
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[http://jcggdb.jp/rcmg/glycodb/Ms_ResultSearch Link]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Category:Databases&diff=783Category:Databases2018-04-22T15:57:17Z<p>Isabel: </p>
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<div>This page lists open-access metabolomics-related databases.<br />
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*Glycan Mass Spectral Database (GMDB) Database of MS spectra data for N- and O-linked glycans and glycolipids glycans along with their partial chemical structures. http://jcggdb.jp/rcmg/glycodb/Ms_ResultSearch<br />
*LIPID MAPS Structure Database (LMSD) The LIPID MAPS Structure Database (LMSD) is comprised of structures and annotations of biologically relevant lipids, and includes representative examples from each category of the LIPID MAPS Lipid Classification System.<br />
*LIPID MAPS Proteome Database (LMPD) Lipid-associated protein sequences with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. Browse or search by species, lipid class association, and/or keywords.<br />
*Madison Metabolomics Consortium Database MS and NMR data sets<br />
*Mass Spectral Library Extensive collection of data sets (EI MS, MS/MS, Replicate spectra, Retention index).<br />
*MoNA: MassBank of North America MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records<br />
*MetabolomeExpress Private and public repository of un-curated/curated metabolomics data; Interactive tools for data visualization, processing and statistical analysis.<br />
*Spectral Database System (SDBS) Repository of spectral database of organic compound; Variety of data sets (MS, NMR, IR, Raman, ESR).</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Main_Page&diff=533Main Page2018-02-06T12:58:30Z<p>Isabel: </p>
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<div>__NOTOC____NOEDITSECTION__{{notitle}}<div style="position: relative; top: -45px; z-index: 100;"><br />
{|cellpadding="5" cellspacing="0"|<br />
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Welcome to the '''Metabolomics Society Online Education Portal''', a [http://en.wikipedia.org/wiki/Wiki wiki]-styled resource designed to be a focal point for educational resources and online tools related to all facets of metabolomics. Check out the main topics:<br />
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<span id="Categories"></span><br />
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{| width=90% style="border: 2px solid #DDDDDD; background-color:rgb(250,250,255); margin-top:20px" cellspacing=6<br />
!colspan=3 style="text-align:center; font-size:150%;"|'''Main topics'''<br />
|-<br />
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|-<br />
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[[:Category:Databases|Databases]]<br /><br /> <br />
[[:Category:Learning Resources|Learning Resources]]<br /><br /><br />
[[:Category:Video Content|Video Content]]<br />
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[[:Category:Data pre-processing|Data pre-processing]]<br /><br /><br />
[[:Category:Metabolomics Society|Metabolomics Society]]<br /><br /><br />
[[:Category:Terminology & Nomenclature|Terminology & Nomenclature]]<br />
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[[:Category:Expert Opinion|Expert Opinion]]<br /><br /><br />
[[:Category:Statistics software|Statistics software]]<br /><br /><br />
[[Special:Categories|All categories]]<br />
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<br />
<center>'''<big>Contributing</big>'''</center><br />
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|-<br />
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* '''To get started:'''<br />Check out the [[Special:Categories|categories list]]. Click a category to browse the list of sub-categories.<br />
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* '''To contribute content:'''<br />
**Check out the [[Help:Editing|Editing Help]] page.<br />
**When editing articles, please observe our [[Metabolomics Society Wiki:Wiki_Policy|wiki policy]] and [[Help:Standard article|standard article guideline]]. If your article is short, please tag it with <nowiki>{{stub}}</nowiki> at the bottom. You can discuss the wiki generally as a platform, or about specific articles or topics—in our dedicated subforum (LINK missing).<br />
|}</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Annual_Conference_of_the_Metabolomics_Society&diff=532Annual Conference of the Metabolomics Society2018-02-06T12:50:31Z<p>Isabel: </p>
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<div>[[Category:Metabolomics Society]]<br />
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Annual conferences of the Metabolomics Society have been held since 2005. A full list of previous meetings can be found at the [http://metabolomicssociety.org/events/past-society-conferences Society homepage]<br />
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[[Category:Metabolomics Society]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=University_of_Birmingham_Metabolomics_Course&diff=528University of Birmingham Metabolomics Course2018-02-06T12:02:03Z<p>Isabel: </p>
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<div>[https://www.futurelearn.com/courses/metabolomics Metabolomics: Understanding Metabolism in the 21st Century]<br />
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[[Category:Learning Resources]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=University_of_Birmingham_Metabolomics_Course&diff=527University of Birmingham Metabolomics Course2018-02-06T12:01:41Z<p>Isabel: </p>
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<div>[https://www.futurelearn.com/courses/metabolomics : Metabolomics: Understanding Metabolism in the 21st Century]<br />
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[[Category:Learning Resources]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Free_online_courses&diff=524Free online courses2018-02-06T11:55:13Z<p>Isabel: </p>
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<div>This page contains a list of freely-available online metabolomics courses.<br />
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[http://www.ebi.ac.uk/training/online/course-list?&&&field_course_type_tid%5B0%5D=46&field_course_type_tid%5B1%5D=47&&page=1| EMBL training videos]<br />
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[https://www.futurelearn.com/courses/metabolomics University of Birmingham Course]<br />
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[[Category:Learning Resources]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=EdX_online_courses&diff=523EdX online courses2018-02-06T11:54:01Z<p>Isabel: </p>
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<div>EdX offers a series of free online courses relevant to metabolomics<br />
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[https://www.edx.org/course/statistics-r-harvardx-ph525-1x Statistics and R]<br />
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[https://www.edx.org/course/statistical-analysis-bioinformatics-usmx-umuc-bif003x Statistical Analysis in Bioinformatics]<br />
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[https://www.edx.org/course/analytics-python-columbiax-bamm-101x Analytics in Python]<br />
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[[Category:Learning Resources]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=EdX_online_courses&diff=522EdX online courses2018-02-06T11:50:17Z<p>Isabel: </p>
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<div>EdX offers a series of free online courses relevant to metabolomics<br />
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[https://www.edx.org/course/statistics-r-harvardx-ph525-1x Statistics and R]<br />
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[https://www.edx.org/course/introduction-systems-biology-ieeex-sysbio1x-0 Introduction to Systems Biology]<br />
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[https://www.edx.org/course/analytics-python-columbiax-bamm-101x Analytics in Python]<br />
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[[Category:Learning Resources]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=EdX_online_courses&diff=521EdX online courses2018-02-06T11:49:53Z<p>Isabel: </p>
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<div>EdX offers a series of free online courses relevant to metabolomics<br />
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[https://www.edx.org/course/statistics-r-harvardx-ph525-1x | Statistics and R]<br />
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[https://www.edx.org/course/introduction-systems-biology-ieeex-sysbio1x-0 | Introduction to Systems Biology]<br />
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[https://www.edx.org/course/analytics-python-columbiax-bamm-101x | Analytics in Python]<br />
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[[Category:Learning Resources]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=KEGG&diff=520KEGG2018-02-06T11:42:15Z<p>Isabel: /* Introduction */</p>
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<div>{{stub}}<br />
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==Introduction==<br />
The [http://www.genome.jp/kegg/ | Kyoto Encyclopedia of Genes and Genomes (KEGG)] is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.<br />
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==See also==<br />
* [https://en.wikipedia.org/wiki/KEGG Wikipedia page]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Human_Metabolome_Database&diff=519Human Metabolome Database2018-02-06T11:41:05Z<p>Isabel: </p>
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<div>{{stub}}<br />
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==Introduction==<br />
The [http://www.hmdb.ca/ | Human Metabolome Database (HMDB)] is a comprehensive, high-quality, freely accessible, online database of small molecule metabolites found in the human body.<br />
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==See also==<br />
* [https://en.wikipedia.org/wiki/Human_Metabolome_Database Wikipedia page]<br />
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[[Category:Databases]]</div>Isabelhttp://wiki.metabolomicssociety.org/index.php?title=Chemspider&diff=518Chemspider2018-02-06T11:36:41Z<p>Isabel: </p>
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<div>{{stub}}<br />
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==Introduction==<br />
ChemSpider is a database of chemicals. ChemSpider is owned by the Royal Society of Chemistry.<br />
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==See also==<br />
* [https://en.wikipedia.org/wiki/ChemSpider Wikipedia page]<br />
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== External links ==<br />
* [http://www.chemspider.com/ Official website]<br />
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[[Category:Databases]]</div>Isabel