Category:Databases

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Introduction

This page lists open-access metabolomics-related databases. Databases are roughly categorized whether they are a repository for raw/processed metabolomics data, provide reference spectra (experimentally or computationally derived) or principally provide curation/ontology of structures/pathways.

Metabolomic repositories

MassIVE

MetaboLights

MetabolomeExpress

Reference databases

Biological Magnetic Resonance Data Bank

Birmingham Metabolite Library

Glycan Mass Spectral Database

Golm Metabolome Database

Human Metabolome Database

Madison Metabolomics Consortium Database

MassBank

MassBank of North America

METLIN

MzCloud

NIST Standard Reference Database

Phenol-Explorer

Spectral Database for Organic Compounds

Currated structures/pathways

BiGG

BioModels

ChEBI

Chemspider

Human Metabolome Database

KEGG

LIPID MAPS Proteome Database

LIPID MAPS Structure Database

MetaCyc

OpenFoodTox

Phenol-Explorer

PhytoHub

PubChem

SwissLipids

WikiPathways