Freely available software tools

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This page contains a list of the most widely used freely available software and tools that are used primarily in metabolomics based on the review article by Spicer et al[1].

Software tools for data preprocessing

Software tools for metabolite annotation

Software tools for data post-processing

Software tools for statistical analysis

Workflows for the analysis of metabolomics data

See also

Expert Opinion from Justin van der Hooft


  1. Spicer R, Salek RM, Moreno P, Cañueto D, Steinbeck C., "Navigating freely-available software tools for metabolomics analysis", Metabolomics. 2017;13(9):106. doi: 10.1007/s11306-017-1242-7.