Difference between revisions of "Category:Databases"

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[[MetaboLights]]
 
[[MetaboLights]]
 +
 
[[MetabolomeExpress]]
 
[[MetabolomeExpress]]
 +
  
 
==Reference databases==
 
==Reference databases==
  
 
[[Biological Magnetic Resonance Data Bank]]
 
[[Biological Magnetic Resonance Data Bank]]
 +
 
[[Birmingham Metabolite Library]]
 
[[Birmingham Metabolite Library]]
 +
 
[[Glycan Mass Spectral Database]]
 
[[Glycan Mass Spectral Database]]
 +
 
[[Golm Metabolome Database]]
 
[[Golm Metabolome Database]]
 +
 
[[Human Metabolome Database]]
 
[[Human Metabolome Database]]
 +
 
[[Madison Metabolomics Consortium Database]]
 
[[Madison Metabolomics Consortium Database]]
 +
 
[[MassBank]]
 
[[MassBank]]
 +
 
[[MassBank of North America]]
 
[[MassBank of North America]]
 +
 
[[METLIN]]
 
[[METLIN]]
 +
 
[[MzCloud]]
 
[[MzCloud]]
 +
 
[[NIST Standard Reference Database]]
 
[[NIST Standard Reference Database]]
 +
 
[[Phenol-Explorer]]
 
[[Phenol-Explorer]]
 +
 
[[Spectral Database for Organic Compounds]]
 
[[Spectral Database for Organic Compounds]]
 +
  
 
==Currated structures/pathways==
 
==Currated structures/pathways==
  
 
[[ChEBI]]
 
[[ChEBI]]
 +
 
[[Chemspider]]
 
[[Chemspider]]
 +
 
[[Human Metabolome Database]]
 
[[Human Metabolome Database]]
 +
 
[[KEGG]]
 
[[KEGG]]
 +
 
[[LIPID MAPS Proteome Database]]
 
[[LIPID MAPS Proteome Database]]
 +
 
[[LIPID MAPS Structure Database]]
 
[[LIPID MAPS Structure Database]]
 +
 
[[Phenol-Explorer]]
 
[[Phenol-Explorer]]
 +
 
[[PubChem]]
 
[[PubChem]]
 +
 
[[SwissLipids]]
 
[[SwissLipids]]

Revision as of 04:48, 20 April 2020

Introduction

This page lists open-access metabolomics-related databases. Databases are roughly categorized whether they are a repository for raw/processed metabolomics data, provide reference spectra (experimentally or computationally derived) or principally provide curation/ontology of structures/pathways.

Metabolomic repositories

MetaboLights

MetabolomeExpress


Reference databases

Biological Magnetic Resonance Data Bank

Birmingham Metabolite Library

Glycan Mass Spectral Database

Golm Metabolome Database

Human Metabolome Database

Madison Metabolomics Consortium Database

MassBank

MassBank of North America

METLIN

MzCloud

NIST Standard Reference Database

Phenol-Explorer

Spectral Database for Organic Compounds


Currated structures/pathways

ChEBI

Chemspider

Human Metabolome Database

KEGG

LIPID MAPS Proteome Database

LIPID MAPS Structure Database

Phenol-Explorer

PubChem

SwissLipids