Difference between revisions of "Category:Databases"

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This page lists open-access metabolomics-related databases.
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==Introduction==
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This page lists open-access metabolomics-related databases. Databases are roughly categorized whether they are a repository for raw/processed metabolomics data, provide reference spectra (experimentally or computationally derived) or principally provide curation/ontology of structures/pathways.
  
Databases in need of a short page & description
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==Metabolomic repositories==
  
*Glycan Mass Spectral Database (GMDB) Database of MS spectra data for N- and O-linked glycans and glycolipids glycans along with their partial chemical structures.
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[[MassIVE]]
*LIPID MAPS Structure Database (LMSD) The LIPID MAPS Structure Database (LMSD) is comprised of structures and annotations of biologically relevant lipids, and includes representative examples from each category of the LIPID MAPS Lipid Classification System.
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*LIPID MAPS Proteome Database (LMPD) Lipid-associated protein sequences with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. Browse or search by species, lipid class association, and/or keywords.
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[[MetaboLights]]
*Madison Metabolomics Consortium Database MS and NMR data sets
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*Mass Spectral Library Extensive collection of data sets (EI MS, MS/MS, Replicate spectra, Retention index).
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[[MetabolomeExpress]]
*MoNA: MassBank of North America MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records
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*MetabolomeExpress Private and public repository of un-curated/curated metabolomics data; Interactive tools for data visualization, processing and statistical analysis.
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==Reference databases==
*Spectral Database System (SDBS) Repository of spectral database of organic compound; Variety of data sets (MS, NMR, IR, Raman, ESR).
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[[Biological Magnetic Resonance Data Bank]]
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[[Birmingham Metabolite Library]]
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[[Glycan Mass Spectral Database]]
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[[Golm Metabolome Database]]
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[[Human Metabolome Database]]
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[[Madison Metabolomics Consortium Database]]
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[[MassBank]]
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[[MassBank of North America]]
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[[METLIN]]
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[[MzCloud]]
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[[NIST Standard Reference Database]]
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[[Phenol-Explorer]]
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[[Spectral Database for Organic Compounds]]
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==Currated structures/pathways==
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[[BiGG]]
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[[BioModels]]
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[[ChEBI]]
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[[Chemspider]]
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[[Human Metabolome Database]]
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[[KEGG]]
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[[LIPID MAPS Proteome Database]]
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[[LIPID MAPS Structure Database]]
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[[MetaCyc]]
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[[OpenFoodTox]]
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[[Phenol-Explorer]]
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[[PhytoHub]]
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[[PubChem]]
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[[SwissLipids]]
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[[WikiPathways]]

Revision as of 22:13, 29 April 2020

Introduction

This page lists open-access metabolomics-related databases. Databases are roughly categorized whether they are a repository for raw/processed metabolomics data, provide reference spectra (experimentally or computationally derived) or principally provide curation/ontology of structures/pathways.

Metabolomic repositories

MassIVE

MetaboLights

MetabolomeExpress

Reference databases

Biological Magnetic Resonance Data Bank

Birmingham Metabolite Library

Glycan Mass Spectral Database

Golm Metabolome Database

Human Metabolome Database

Madison Metabolomics Consortium Database

MassBank

MassBank of North America

METLIN

MzCloud

NIST Standard Reference Database

Phenol-Explorer

Spectral Database for Organic Compounds

Currated structures/pathways

BiGG

BioModels

ChEBI

Chemspider

Human Metabolome Database

KEGG

LIPID MAPS Proteome Database

LIPID MAPS Structure Database

MetaCyc

OpenFoodTox

Phenol-Explorer

PhytoHub

PubChem

SwissLipids

WikiPathways