Difference between revisions of "Software"
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[http://bioconductor.org/packages/release/bioc/html/metaMS.html metaMS] for GC-MS | [http://bioconductor.org/packages/release/bioc/html/metaMS.html metaMS] for GC-MS | ||
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[https://cran.r-project.org/web/packages/MetabolAnalyze MetabolAnalyze] for MS and NMR | [https://cran.r-project.org/web/packages/MetabolAnalyze MetabolAnalyze] for MS and NMR | ||
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=Software tools for metabolite annotation= | =Software tools for metabolite annotation= | ||
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[http://bioconductor.org/packages/release/bioc/html/Rdisop.html Rdisop], Level 4 | [http://bioconductor.org/packages/release/bioc/html/Rdisop.html Rdisop], Level 4 | ||
[https://bio.informatik.uni-jena.de/software/sirius SIRIUS and CSI Finger ID], Level 4 | [https://bio.informatik.uni-jena.de/software/sirius SIRIUS and CSI Finger ID], Level 4 | ||
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[http://ms2lda.org MS2LDA] | [http://ms2lda.org MS2LDA] | ||
Revision as of 03:08, 11 June 2021
This page contains a list of the most widely used freely available software and tools that are used primarily in metabolomics based on the review article by Spicer et al[1].
Contents
Software tools for data preprocessing
XCMS for LC-MS and GC-MS
MetAlign for LC-MS
MS-DIAL for LC-MS
mzMatch for LC-MS
IDEOM for LC-MS
AMDIS for GC-MS
MetaboliteDetector for GC-MS
MeltDB for LC-MS and GC-MS
metaMS for GC-MS
SpectConnect for GC-MS
rNMR for NMR
Software tools for data post-processing
batchCorr for LC-MS
crmn for LC-MS and GC-MS
EigenMS for LC-MS
KMDA for MS
metabomxtr for LC-MS and GC-MS
Metabnorm for NMR
MetabR for LC-MS
MetNorm for LC-MS, GC-MS and NMR
MSPrep for LC-MS
muma for MS and NMR
Software tools for statistical analysis
Ionwinze for LC-MS
MetabolAnalyze for MS and NMR
muma for MS and NMR
ropls for MS and NMR
MetaboAnalyst for LC-MS and NMR
Software tools for metabolite annotation
CAMERA, Level 4
Rdisop, Level 4
SIRIUS and CSI Finger ID, Level 4
ProbMetab, Level 3
MetAssign–mzMatch, Level 3
MetFrag, Level 2a
CFM-ID, Level 2a
FingerID, Level 2a
MAGMa, Level 2a
MyCompoundID, Level 2a
BATMAN, NMR
Bayesil, NMR
MetaboMiner, NMR
SpinAssign, NMR
COLMAR, NMR
Workflows for the analysis of metabolomics data
Galaxy-M for LC-MS
GNPS for LC-MS
MetaboAnalyst 4.0 for LC-MS and NMR
MAVEN for LC-MS
MAIT for LC-MS
MZmine 2 for LC-MS
Workflow4metabolomics for LC-MS, GC-MS and NMR
XCMS Online for LC-MS and GC-MS
References
- ↑ Spicer R, Salek RM, Moreno P, Cañueto D, Steinbeck C., "Navigating freely-available software tools for metabolomics analysis", Metabolomics. 2017;13(9):106. doi: 10.1007/s11306-017-1242-7.
